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Thanks Burton and David for your suggestions. I've just started cycling up since winter pause.
I turns out that the lower end of the drain needed more fall per run. The drain pipe needed to empty completely to stop the siphon. Before, with even a little moving water in a full drain pipe the siphon would pick up again after the breather tube had broken it.
Ok several questions.
Some points to consider, the glass water bottle is a poor choice to "see" what is happening because it is tapered and will actually create a Affnan type syphon effect because there is less surface area of water to move given the volume of pipe / water.
Try finding a plastic water bottle and cutting it in half and use the TOP part of it, less chance of a parallax this way too. Make sure not to block the air tube when doing this, there is a good demonstration of this on youtube.
You could also consider removing the current bell and replacing it with a larger one, but you will need to use a reducer like in the Affnan's bell siphon to reduce the amount of water area needed to start the siphon.
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